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FGDP: functional genomics data pipeline for automated, multiple microarray data analyses
(Oxford University Press, 2004)
Gene expression microarrays and oligonucleotide GeneChips™ have provided biologists with a means of measuring, in a single experiment, the expression levels of entire genomes under a variety of conditions. As with any ...
ClutrFree: cluster tree visualization and interpretation
(Oxford University Press, 2004)
ClutrFree facilitates the visualization and interpretation of clusters or patterns computed from microarray data through a graphical user interface that displays patterns, membership information of the genes and annotation ...
Determination of strongly overlapping signaling activity from microarray data
(BioMed Central, 2006)
Background
As numerous diseases involve errors in signal transduction, modern therapeutics often target proteins involved in cellular signaling. Interpretation of the activity of signaling pathways during disease development ...
WaveRead: Automatic measurement of relative gene expression levels from microarrays using wavelet analysis
(Elsevier, 2006)
Gene expression microarrays monitor the expression levels of thousands of genes in an experiment simultaneously. To utilize the information generated, each of the thousands of spots on a microarray image must be properly ...
Bayesian decomposition analysis of bacterial phylogenomic profiles
(Adis, 2005)
BACKGROUND:
The past two decades have seen the appearance of new infectious diseases and the reemergence of old diseases previously thought to be under control. At the same time, the effectiveness of the existing ...