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Diving into a simple anguilliform swimmer’s sensitivity
(Oxford University Press, 2020-09-16)
Computational models of aquatic locomotion range from modest individual simple swimmers in 2D to sophisticated 3D multi-swimmer models that attempt to parse collective behavioral dynamics. Each of these models contain a ...
A semi-automated finite difference mesh creation method for use with immersed boundary software IB2d and IBAMR
(IOP Publishing, 2020-11-27)
Numerous fluid-structure interaction problems in biology have been investigated using the immersed boundary method. The advantage of this method is that complex geometries, e.g., internal or external morphology, can easily ...
Hopscotching jellyfish: combining different duty cycle kinematics can lead to enhanced swimming performance
(IOP Publishing, 2021-10-26)
Jellyfish (Medusozoa) have been deemed the most energy-efficient animals in the world. Their bell morphology and relatively simple nervous systems make them attractive to robotocists. Although, the science community has ...
IB2d Reloaded: a more powerful Python and MATLAB implementation of the immersed boundary method
(Wiley, 2018-12)
The immersed boundary (IB) method is an elegant way to fully couple the motion of a fluid and deformations of an immersed elastic structure. In that vein, the IB2d software allows for expedited explorations of fluid-structure ...
Fluid-structure interaction for the classroom: interpolation, hearts, and swimming!
(Society for Industrial and Applied Mathematics, 2021)
While students may find spline interpolation quite digestible, based on their familiarity with continuity of a function and its derivatives, some of its inherent value may be missed when students only see it applied to ...
Passive concentration dynamics incorporated into the library IB2d, a two-dimensional implementation of the immersed boundary method
(IOP Publishing, 2022-03-10)
In this paper, we present an open-source software library that can be used to numerically simulate the advection and diffusion of a chemical concentration or heat density in a viscous fluid where a moving, elastic boundary ...
A swing of beauty: pendulums, fluids, forces, and computers
(MDPI, 2020-04-12)
While pendulums have been around for millennia and have even managed to swing their way into undergraduate curricula, they still offer a breadth of complex dynamics to which some has still yet to have been untapped. To ...
Bifurcations in valveless pumping techniques from a coupled fluid-structure-electrophysiology model in heart development
(2017-12-06)
We explore an embryonic heart model that couples electrophysiology and muscle-force generation to flow induced using a 2𝘋 fluid-structure interaction framework based on the immersed boundary method. The propagation of ...
Pulsing corals: a story of scale and mixing
(Biomath Forum, 2017-12-27)
Effective methods of fluid transport vary across scale. A commonly used dimensionless number for quantifying the effective scale of fluid transport is the frequency based Reynolds number, Ref, which gives the ratio of ...
A fully coupled fluid-structure-muscle-electrophysiology model in heart development
(Biomath Forum, 2017-03-02)
The vertebrate heart begins to pump when its morphology is nothing more than a valveless tube, composed of an outer layer of myocardial cells surrounding an inner layer of endocardial cells. It has been proposed that the ...