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FGDP: functional genomics data pipeline for automated, multiple microarray data analyses
(Oxford University Press, 2004)
Gene expression microarrays and oligonucleotide GeneChips™ have provided biologists with a means of measuring, in a single experiment, the expression levels of entire genomes under a variety of conditions. As with any ...
WaveRead: Automatic measurement of relative gene expression levels from microarrays using wavelet analysis
(Elsevier, 2006)
Gene expression microarrays monitor the expression levels of thousands of genes in an experiment simultaneously. To utilize the information generated, each of the thousands of spots on a microarray image must be properly ...
Application of Bayesian Decomposition for analysing microarray data
(Oxford University Press, 2002)
Motivation: Microarray and gene chip technology provide high throughput tools for measuring gene expression levels in a variety of circumstances, including cellular response to drug treatment, cellular growth and development, ...
ASAP: automated sequence annotation pipeline fo rw eb-based updating of sequence information with a local dynamic database
(Oxford University Press, 2003)
The automated sequence annotation pipeline (ASAP) is designed to ease routine investigation of new functional annotations on unknown sequences, such as expressed sequence tags (ESTs), through querying of web-accessible ...
BeoBLAST: distributed BLAST and PSI-BLAST on a Beowulf cluster
(Oxford University Press, 2002)
BeoBLAST is an integrated software package that handles user requests and distributes BLAST and PSI-BLAST searches to nodes of a Beowulf cluster, thus providing a simple way to implement a scalable BLAST system on top of ...