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A semi-automated finite difference mesh creation method for use with immersed boundary software IB2d and IBAMR
(IOP Publishing, 2020-11-27)
Numerous fluid-structure interaction problems in biology have been investigated using the immersed boundary method. The advantage of this method is that complex geometries, e.g., internal or external morphology, can easily ...
IB2d Reloaded: a more powerful Python and MATLAB implementation of the immersed boundary method
(Wiley, 2018-12)
The immersed boundary (IB) method is an elegant way to fully couple the motion of a fluid and deformations of an immersed elastic structure. In that vein, the IB2d software allows for expedited explorations of fluid-structure ...
Passive concentration dynamics incorporated into the library IB2d, a two-dimensional implementation of the immersed boundary method
(IOP Publishing, 2022-03-10)
In this paper, we present an open-source software library that can be used to numerically simulate the advection and diffusion of a chemical concentration or heat density in a viscous fluid where a moving, elastic boundary ...
Bifurcations in valveless pumping techniques from a coupled fluid-structure-electrophysiology model in heart development
(2017-12-06)
We explore an embryonic heart model that couples electrophysiology and muscle-force generation to flow induced using a 2𝘋 fluid-structure interaction framework based on the immersed boundary method. The propagation of ...