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    Identification of aberrant pathway and network activity from high-throughput data

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    Date
    2011
    Author
    Ochs, Michael F.
    Karchin, R.
    Ressom, H.
    Gentleman, Robert C.
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    Abstract
    Abstract
    The workshop focused on approaches to deduce changes in biological activity in cellular pathways and networks that drive phenotype from high-throughput data. Work in cancer has demonstrated conclusively that cancer etiology is driven not by single gene mutation or expression change, but by coordinated changes in multiple signaling pathways. These pathway changes involve different genes in different individuals, leading to the failure of gene-focused analysis to identify the full range of mutations or expression changes driving cancer development. There is also evidence that metabolic pathways rather than individual genes play the critical role in a number of metabolic diseases. Tools to look at pathways and networks are needed to improve our understanding of disease and to improve our ability to target therapeutics at appropriate points in these pathways.
    Citation:
    Karchin, R., Ochs, M. F., Stuart, J. M., & Bader, J. S. (2011). Identification of aberrant pathway and network activity from high-throughput data. In R. B. Altman, L. Hunter, T. A. Murray, & T. E. Klein (Eds.) Pacific Symposium on Biocomputing 2011, 364-368. https://doi.org/10.1142/9789814335058_0038
    Description
    Department of Mathematics and Statistics
    URI
    https://doi.org/10.1142/9789814335058_0038
    https://pubmed.ncbi.nlm.nih.gov/21121064/
    http://dr.tcnj.edu/handle/2900/4205
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